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Creators/Authors contains: "Hu, Ying"

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  1. We prove that Khovanov homology with coefficients in\Z/2\Zdetects the(2,5)torus knot. Our proof makes use of a wide range of deep tools in Floer homology, Khovanov homology, and Khovanov homotopy. We combine these tools with classical results on the dynamics of surface homeomorphisms to reduce the detection question to a problem about mutually braided unknots, which we then solve with computer assistance. 
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    Free, publicly-accessible full text available April 9, 2026
  2. Abstract In this article, we show that all cyclic branched covers of a Seifert link have left‐orderable fundamental groups, and therefore admit co‐oriented taut foliations and are not ‐spaces, if and only if it is not an link up to orientation. This leads to a proof of the link conjecture for Seifert links. When is an link up to orientation, we determine which of its canonical ‐fold cyclic branched covers have nonleft‐orderable fundamental groups. In addition, we give a topological proof of Ishikawa's classification of strongly quasi‐positive Seifert links and we determine the Seifert links that are definite, resp., have genus zero, resp. have genus equal to its smooth 4‐ball genus, among others. In the last section, we provide a comprehensive survey of the current knowledge and results concerning the link conjecture. 
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  3. Abstract The HH 111 protostellar disk has recently been found to host a pair of spiral arms. Here we report the dust polarization results in the disk as well as the inner envelope around it, obtained with the Atacama Large Millimeter/submillimeter Array in continuum atλ∼ 870μm and ∼0.″05 resolution. In the inner envelope, polarization is detected with a polarization degree of ∼6% and an orientation almost everywhere parallel to the minor axis of the disk and thus likely to be due to the dust grains magnetically aligned mainly by toroidal fields. In the disk, the polarization orientation is roughly azimuthal on the far side and becomes parallel to the minor axis on the near side, with a polarization gap in between on the far side near the central protostar. The disk polarization degree is ∼2%. The polarized intensity is higher on the near side than the far side, showing a near–far side asymmetry. More importantly, the polarized intensity and thus polarization degree are lower in the spiral arms but higher in between the arms, showing an anticorrelation of the polarized intensity with the spiral arms. Our modeling results indicate that this anticorrelation is useful for constraining the polarization mechanism and is consistent with the dust self-scattering by the grains that have grown to a size of ∼150μm. The interarms are sandwiched and illuminated by two brighter spiral arms and thus have higher polarized intensity. Our dust self-scattering model can also reproduce the observed polarization orientation parallel to the minor axis on the near side and the observed azimuthal polarization orientation at the two disk edges in the major axis. Further modeling work is needed to study how to reproduce the observed near–far side asymmetry in the polarized intensity and the observed azimuthal polarization orientation on the far side. 
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  4. Abstract Goss's wilt, caused by the Gram-positive actinobacterium Clavibacter nebraskensis, is an important bacterial disease of maize. The molecular and genetic mechanisms of resistance to the bacterium, or, in general, Gram-positive bacteria causing plant diseases, remain poorly understood. Here, we examined the genetic basis of Goss's wilt through differential gene expression, standard genome-wide association mapping (GWAS), extreme phenotype (XP) GWAS using highly resistant (R) and highly susceptible (S) lines, and quantitative trait locus (QTL) mapping using 3 bi-parental populations, identifying 11 disease association loci. Three loci were validated using near-isogenic lines or recombinant inbred lines. Our analysis indicates that Goss's wilt resistance is highly complex and major resistance genes are not commonly present. RNA sequencing of samples separately pooled from R and S lines with or without bacterial inoculation was performed, enabling identification of common and differential gene responses in R and S lines. Based on expression, in both R and S lines, the photosynthesis pathway was silenced upon infection, while stress-responsive pathways and phytohormone pathways, namely, abscisic acid, auxin, ethylene, jasmonate, and gibberellin, were markedly activated. In addition, 65 genes showed differential responses (up- or down-regulated) to infection in R and S lines. Combining genetic mapping and transcriptional data, individual candidate genes conferring Goss's wilt resistance were identified. Collectively, aspects of the genetic architecture of Goss's wilt resistance were revealed, providing foundational data for mechanistic studies. 
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  5. A thermal component is suggested to be the physical composition of the ejecta of several bright gamma-ray bursts (GRBs). Such a thermal component is discovered in the time-integrated spectra of several short GRBs as well as long GRBs. In this work, we present a comprehensive analysis of ten very short GRBs detected by Fermi Gamma-Ray Burst Monitor to search for the thermal component. We found that both the resultant low-energy spectral index and the peak energy in each GRB imply a common hard spectral feature, which is in favor of the main classification of the short/hard versus long/soft dichotomy in the GRB duration. We also found moderate evidence for the detection of thermal component in eight GRBs. Although such a thermal component contributes a small proportion of the global prompt gamma-ray emission, the modified thermal-radiation mechanism could enhance the proportion significantly, such as in subphotospheric dissipation. 
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  6. Plants are vulnerable to disease through pathogen manipulation of phytohormone levels, which otherwise regulate development, abiotic, and biotic responses. Here, we show that the wheat pathogen Xanthomonas translucens pv. undulosa elevates expression of the host gene encoding 9- cis -epoxycarotenoid dioxygenase ( TaNCED-5BS ), which catalyzes the rate-limiting step in the biosynthesis of the phytohormone abscisic acid and a component of a major abiotic stress-response pathway, to promote disease susceptibility. Gene induction is mediated by a type III transcription activator-like effector. The induction of TaNCED-5BS results in elevated abscisic acid levels, reduced host transpiration and water loss, enhanced spread of bacteria in infected leaves, and decreased expression of the central defense gene TaNPR1 . The results represent an appropriation of host physiology by a bacterial virulence effector. 
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